1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacactcttccgcccaaactcgcgcccacccacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGCCCTCCAGCCTGGTGGCGGACATCACCAGCCGGGCGGGGCTGCAGCAGTT
species | Chlamydomonas reinhardtii |
transcript | EDP03845 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGTGGGAGCACAAGGGCGTCATGCAAATGGAGGCGGGCGTGGGCGAGG GCATGATGTACTACGGCGACGCGCCCAC-ACCACCAGTGGCGGCGAGGCGCEST: gi|49465093|gb|BP093006.1|BP093006
genomic: GCTGTGGGAGCACAAGGGCGTCATGCAGATGGAGGCGGGCGTGGGCGAGGgtgagaggtg ... cacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGC
EST: GCTGTGGGAGCACAAGGGCGTCATGCAGATGGAGGCGGGCGTGGGCGAGG GCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGEST: gi|49459098|gb|BP087011.1|BP087011
genomic: GCTGTGGGAGCACAAGGGCGTCATGCAGATGGAGGCGGGCGTGGGCGAGGgtgagaggtg ... cacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGG
EST: GCTGTGGGAGCACAAGGGCGTCATGCAGATGGAGGCGGGCGTGGGCGAGG GCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGC
genomic: GCTGTGGGAGCACAAGGGCGTCATGCAGATGGAGGCGGGCGTGGGCGAGGgtgagaggtg ... cacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGC
acacacacacacatacacactcttccgcccaaactcgcgcccacccacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGCCCTCCAGCCTGGTGGCGGACATCACCAGCCGGGCGGGGCTGCAGCAGTT
cccaccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacactcttccgcccaaactcgcgcccacccacccaacagGCATGATGTACTACGGCGACGCGCCCACCACCACCAGTGGCGGCGAGGCGCCCTCCAGCCTGGTGGCGGACATCACCAGCCGGGCGGGGCTGCAGCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccac