1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccatggcgccgcgttgcatcatgcccgcgcatatttgctgccttttcccgtgcccccgcgacacacgctcatcgaggtacgcacggtttgctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGGTGCTGCCCACGCTACAG
species | Chlamydomonas reinhardtii |
transcript | EDP03845 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCTTGTACCTGGAG ACGGACGGCTCGCCGGAGCGGGATGCGCTGGTGCAGAAGCTGGGGGTCAAGEST: gi|15695707|gb|BI720012.1|BI720012
genomic: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAGgtgggagggg ... gctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAG
EST: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAG ACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGEST: gi|49465093|gb|BP093006.1|BP093006
genomic: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAGgtgggagggg ... gctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAG
EST: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAG ACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGEST: gi|15373127|gb|BI532553.1|BI532553
genomic: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAGgtgggagggg ... gctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAG
EST: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAG ACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCEST: gi|7686825|gb|AW757473.1|AW757473
genomic: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAGgtgggagggg ... gctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGC
EST: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAG ACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAG
genomic: TCCAGCGCACGGCGCGGGAGTGTCCTGACGTCAGCTTCCTGTACCTGGAGgtgggagggg ... gctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAG
ttcccgtgcccccgcgacacacgctcatcgaggtacgcacggtttgctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGGTGCTGCCCACGCTACAG
tttgctcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccatggcgccgcgttgcatcatgcccgcgcatatttgctgccttttcccgtgcccccgcgacacacgctcatcgaggtacgcacggtttgctcctgcagACGGACGGCTCGCCGGAGCGGGAAGCGCTGGTGCAGAAGCTGGGGGTCAAGGTGCTGCCCACGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - catgccc
- - - - - - - - - - - - - -gcgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcacg