1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtctgtgaatccgaggattatggatcttcatcatggatttaggatctgcggatcgcggatccgtgcatcataatatgttgcccttggtggggg...
species | Chlamydomonas reinhardtii |
transcript | EDP03845 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAGEST: gi|161793853|gb|FC078765.1|FC078765
genomic: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
EST: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAGEST: gi|15695707|gb|BI720012.1|BI720012
genomic: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
EST: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAGEST: gi|49465093|gb|BP093006.1|BP093006
genomic: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
EST: CCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAGEST: gi|15373127|gb|BI532553.1|BI532553
genomic: CCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
EST: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAGEST: gi|7686825|gb|AW757473.1|AW757473
genomic: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
EST: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG GAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
genomic: GCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtc ... cgctgtgcagGAGCAAGCCCGCCGCATGGCCAAGTGCGCGGCGGTCAAGCACACCATCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAGgtgggtggtctgtgaatccgaggattatggatcttcatcatggatttaggatctgcggatcgcggatccgtgcatcataatatgttgcccttggtggggg
- - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatatgt