1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aggcacgtggcgtgcgcccatgaccaggccactatggctcatgtcgctccgtttgcgtgcgacaacccgcaattttgtggcgatcatgtgcatcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP03845 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAG GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGEST: gi|161793853|gb|FC078765.1|FC078765
genomic: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAGgtgagcgtcg ... catcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
EST: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAG GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGEST: gi|15695707|gb|BI720012.1|BI720012
genomic: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAGgtgagcgtcg ... catcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
EST: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAG GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGEST: gi|15373127|gb|BI532553.1|BI532553
genomic: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAGgtgagcgtcg ... catcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
EST: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAG GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGEST: gi|7686825|gb|AW757473.1|AW757473
genomic: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAGgtgagcgtcg ... catcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
EST: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAG GTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
genomic: AGTTCCTGCAGGCACTGGATGAGGCGGGGCCCAAGCTGGTGGTCGTTGAGgtgagcgtcg ... catcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAG
gctccgtttgcgtgcgacaacccgcaattttgtggcgatcatgtgcatcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG
aattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcacgtggcgtgcgcccatgaccaggccactatggctcatgtcgctccgtttgcgtgcgacaacccgcaattttgtggcgatcatgtgcatcatccagGTGCAATCCGAGCGGGTGTGCGAGACCGGCATGGACGAGCCCGAGCCCGAGATCCACTGGAAGCTGGACGCGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
aggcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attttgt