1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGTTCTCGGTCATCACGCTGCTGTCGGCGGCGCTGCTGCTGCCCGCCACGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATGgtgagaaggggcgtgggttgtgagttctgtgaaccaaatgaaaccaaactagcggggcacaggagcggaggacaggagcggagcacaggagcggagcaca...
species | Chlamydomonas reinhardtii |
transcript | EDP02676 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATG GGCGTGCGCTCGCCCAACGGGGTGCTGGCGCACGCGGCCATGGCGGNGCTGEST: gi|10785243|gb|AV641915.1|AV641915
genomic: CGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATGgtgagaaggg ... acacacgcagGGCGTGCGCTCGCCCAACGGGGTGCTGGCGCACGCGGCCATGGCGGGGCTG
EST: CGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATG GGCGTGCGCTCGCCCAACGGGGTGCTGGCGCACGCGGCCATGGCGGGGCTG
genomic: CGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATGgtgagaaggg ... acacacgcagGGCGTGCGCTCGCCCAACGGGGTGCTGGCGCACGCGGCCATGGCGGGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTCTCGGTCATCACGCTGCTGTCGGCGGCGCTGCTGCTGCCCGCCACGCTGCTGTTTGAGGGCTGGAAGCTCAGTCCCGTGGGGCTGGCGGAAATGgtgagaaggggcgtgggttgtgagttctgtgaaccaaatgaaaccaaactagcggggcacaggagcggaggacaggagcggagcacaggagcggagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa