1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCACCTTCAACTGGTTTGGCTTCCTGTCAGCCATGGGCTCCAACCTCACCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAGgtaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt...
species | Chlamydomonas reinhardtii |
transcript | EDP02676 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAG GACAAGGACGGCAATGCTGAGGCGCCTCTGGACAACATGGCGCTGTTCTCGEST: gi|10785243|gb|AV641915.1|AV641915
genomic: CCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAGgtaggcgtgt ... ccacccacagGACAAGGACGGCAATGCTGAGGCGCCTCTGGACAACATGGCGCTGTTCTCG
EST: CCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAG GACAAGGACGGCAATGCTGAGGCGCCTCTGGACAACATGGCGCTGTTCTCG
genomic: CCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAGgtaggcgtgt ... ccacccacagGACAAGGACGGCAATGCTGAGGCGCCTCTGGACAACATGGCGCTGTTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCACCTTCAACTGGTTTGGCTTCCTGTCAGCCATGGGCTCCAACCTCACCTTCCAGAGCCGCAACGTGCTGTCCAAGAAGCTGATGCTCAAGAAGAAGgtaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt