1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGGTGGGCAGCTGCGTGACGCTGGTGGCGTGGGGCAGCGGCCTGCAGCGGG
species | Chlamydomonas reinhardtii |
transcript | EDP02676 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGEST: gi|22061866|gb|BQ814504.1|BQ814504
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGEST: gi|49463747|gb|BP091660.1|BP091660
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCEST: gi|14237626|gb|BG856442.1|BG856442
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTC
EST: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGEST: gi|8514072|gb|BE121967.1|BE121967
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
ccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGGTGGGCAGCTGCGTGACGCTGGTGGCGTGGGGCAGCGGCCTGCAGCGGG
ctttaac putative branch site (score: 3)
tctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTGGTGGGCAGCTGCGTGACGCTGGTGGCGTGGGGCAGCGGCCTGCAGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG