1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atctgatgtgacgcgatgcgatgtgatgttgaaactactttgacagacctcgaatgccttatacaacattgcgtctgcctgctcgccctccccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTCACCAACATGAGCCTGGGCGCCGTGGCGGTGTCCTTCACACACACCATCA
species | Chlamydomonas reinhardtii |
transcript | EDP02676 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACC ATCAAGAACGTGCTGCCGCTGGCCGAGGTGCACACCCTGGGAAACCTGCTCEST: gi|15704557|gb|BI728862.1|BI728862
genomic: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACCgtgagtgtgt ... cccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTC
EST: GTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACC ATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTCEST: gi|22061866|gb|BQ814504.1|BQ814504
genomic: GTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACCgtgagtgtgt ... cccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTC
EST: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACC ATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGNGTAACCTGCTCEST: gi|14237626|gb|BG856442.1|BG856442
genomic: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACCgtgagtgtgt ... cccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTC
EST: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACC ATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGNGTAACCTGCTC
genomic: TGGCGTGGGGCAGCGGCCTGCAGCGGGCGCCCAAGATCACATGGAGCACCgtgagtgtgt ... cccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTC
gacctcgaatgccttatacaacattgcgtctgcctgctcgccctccccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTCACCAACATGAGCCTGGGCGCCGTGGCGGTGTCCTTCACACACACCATCA
cctgctcgccctcccc CT-rich tract
ttatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgatgtgacgcgatgcgatgtgatgttgaaactactttgacagacctcgaatgccttatacaacattgcgtctgcctgctcgccctccccgcctcagATCAAGAACGTGCTGCCGCTGGCCGTGGTGCACACCCTGGGTAACCTGCTCACCAACATGAGCCTGGGCGCCGTGGCGGTGTCCTTCACACACACCATCA
- - - - - - - - - - atgtgat
- - - - - - - - - - - - - - - - - - - - tgacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttataca