1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCTTCAACTCCCTGAAGGACGACTACGAGCCCGGTGACCTGGGCTTCGACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtggggcccgtgtgaggatgtggaagcggtgggcggcggataagggtaggggaagcccagggccaggccacaattcgcagccctaccacagcacacccagccttccctccctcggcatgcctgacgctgcgctccctgcctttcctctccctctcccctcag
species | Chlamydomonas reinhardtii |
transcript | EDP01013 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10774912|gb|AV625735.1|AV625735
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|34990052|gb|CF563969.1|CF563969
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|14231650|gb|BG850466.1|BG850466
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10769783|gb|AV620608.1|AV620608
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10771365|gb|AV622188.1|AV622188
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10774280|gb|AV625103.1|AV625103
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10768905|gb|AV619730.1|AV619730
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|49459481|gb|BP087394.1|BP087394
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|49460094|gb|BP088007.1|BP088007
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10774766|gb|AV625589.1|AV625589
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|34992069|gb|CF565986.1|CF565986
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|49459783|gb|BP087696.1|BP087696
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|49458208|gb|BP086121.1|BP086121
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|22061907|gb|BQ814531.1|BQ814531
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|34992070|gb|CF565987.1|CF565987
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCC-ACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCCAGGAGCTGAACAACGEST: gi|10768797|gb|AV619622.1|AV619622
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACG
EST: CCCCCTGGGGCCTCAAGCCCACCGATCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|6543074|gb|AV388858.1|AV388858
genomic: CCCCCT-GGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|34992238|gb|CF566155.1|CF566155
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|34992068|gb|CF565985.1|CF565985
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10770831|gb|AV621656.1|AV621656
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|23358956|gb|BU646776.1|BU646776
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10772216|gb|AV623039.1|AV623039
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|14231649|gb|BG850465.1|BG850465
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|23358732|gb|BU646552.1|BU646552
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGACCA-CGGCCGCCTGGCCATGAEST: gi|10769927|gb|AV620752.1|AV620752
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGA
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|10771051|gb|AV621874.1|AV621874
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTTCAACTCCCTGAAGGACGACTACGAGCCCGGTGACCTGGGCTTCGACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtggggcccgtgtgaggatgtggaagcggtgggcggcggataagggtaggggaagcccagggccaggccacaattcgcagccctaccacagcacacccagccttccctccctcggcatgcctgacgctgcgctccctgcctttcctctccctctcccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA