Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTGCCACTGTGGCCGTCAAGTCCGTGTCTGGCCGTCGCACAACTGCCGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtctttctaggtgctcgacttctctgtttcttggccttgtgccgttgcctcgcactcatacaaccttcatgcctcgcttgcgtgtgggaaacagctgctcgggggggggggctgtactcttttgtttaccccataagctccccgcctgccgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01013
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791203|gb|AV628569.1|AV628569
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10791903|gb|AV629269.1|AV629269
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768511|gb|AV619336.1|AV619336
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|22049788|gb|BQ808929.1|BQ808929
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770210|gb|AV621035.1|AV621035
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10772688|gb|AV623511.1|AV623511
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768715|gb|AV619540.1|AV619540
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774854|gb|AV625677.1|AV625677
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770544|gb|AV621369.1|AV621369
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10792383|gb|AV629749.1|AV629749
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768344|gb|AV619169.1|AV619169
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10789747|gb|AV627112.1|AV627112
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|34990053|gb|CF563970.1|CF563970
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774783|gb|AV625606.1|AV625606
EST:     CGATGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10773317|gb|AV624140.1|AV624140
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770143|gb|AV620968.1|AV620968
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768645|gb|AV619470.1|AV619470
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|49459349|gb|BP087262.1|BP087262
EST:     CGTTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10769046|gb|AV619871.1|AV619871
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10793304|gb|AV630670.1|AV630670
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10771416|gb|AV622239.1|AV622239
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10775044|gb|AV625867.1|AV625867
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768205|gb|AV619030.1|AV619030
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTT-GAGGGTGTGT-CGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|49465585|gb|BP093498.1|BP093498
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|49467795|gb|BP095656.1|BP095656
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770756|gb|AV621581.1|AV621581
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770047|gb|AV620872.1|AV620872
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10770808|gb|AV621633.1|AV621633
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774037|gb|AV624860.1|AV624860
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10773106|gb|AV623929.1|AV623929
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10771294|gb|AV622117.1|AV622117
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774559|gb|AV625382.1|AV625382
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|34992070|gb|CF565987.1|CF565987
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774768|gb|AV625591.1|AV625591
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768502|gb|AV619327.1|AV619327
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10772952|gb|AV623775.1|AV623775
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10772059|gb|AV622882.1|AV622882
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10791635|gb|AV629001.1|AV629001
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10769057|gb|AV619882.1|AV619882
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10769504|gb|AV620329.1|AV620329
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10792984|gb|AV630350.1|AV630350
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10768445|gb|AV619270.1|AV619270
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|49465578|gb|BP093491.1|BP093491
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|49465836|gb|BP093749.1|BP093749
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10793029|gb|AV630395.1|AV630395
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774563|gb|AV625386.1|AV625386
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|23358956|gb|BU646776.1|BU646776
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10793772|gb|AV631138.1|AV631138
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10769804|gb|AV620629.1|AV620629
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10769549|gb|AV620374.1|AV620374
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774164|gb|AV624987.1|AV624987
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10774226|gb|AV625049.1|AV625049
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|23358732|gb|BU646552.1|BU646552
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
EST: gi|10772808|gb|AV623631.1|AV623631
EST:     CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCAT                         ACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC
genomic: CGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtcttt ... ccgcttgcagACACGAAGAACCTTCCCGGCGTGACCGCTCCCTTTGAGGGTGTGTTCGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCGTGCCACTGTGGCCGTCAAGTCCGTGTCTGGCCGTCGCACAACTGCCGCTGAGCCGCAGACTGCTGCGCCGGTCGCAGCGGAGGACGTCTTCGCATgtaagtctttctaggtgctcgacttctctgtttcttggccttgtgccgttgcctcgcactcatacaaccttcatgcctcgcttgcgtgtgggaaacagctgctcgggggggggggctgtactcttttgtttaccccataagctccccgcctgccgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA