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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtccgcacttgcacagcccagcagccctcgcttgcatgtatgtatgcccatgtctgccactgacccttcgcccttgctctttccaaccccacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCGGCCAGGGCTTCTGGGAGCCCCTGCTGATCGCCATCGGCGTGGCCGAGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01013
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769474|gb|AV620299.1|AV620299
EST:     CCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774912|gb|AV625735.1|AV625735
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10791203|gb|AV628569.1|AV628569
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10791903|gb|AV629269.1|AV629269
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768511|gb|AV619336.1|AV619336
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCT
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCT
EST: gi|22049788|gb|BQ808929.1|BQ808929
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCA
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCA
EST: gi|10770210|gb|AV621035.1|AV621035
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10772688|gb|AV623511.1|AV623511
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768715|gb|AV619540.1|AV619540
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774854|gb|AV625677.1|AV625677
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769783|gb|AV620608.1|AV620608
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10770544|gb|AV621369.1|AV621369
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGACGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10792383|gb|AV629749.1|AV629749
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768344|gb|AV619169.1|AV619169
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|34990053|gb|CF563970.1|CF563970
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10770143|gb|AV620968.1|AV620968
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768645|gb|AV619470.1|AV619470
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49459349|gb|BP087262.1|BP087262
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774280|gb|AV625103.1|AV625103
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49459481|gb|BP087394.1|BP087394
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769046|gb|AV619871.1|AV619871
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10793304|gb|AV630670.1|AV630670
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49460094|gb|BP088007.1|BP088007
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10771416|gb|AV622239.1|AV622239
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10775044|gb|AV625867.1|AV625867
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774766|gb|AV625589.1|AV625589
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768205|gb|AV619030.1|AV619030
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49465585|gb|BP093498.1|BP093498
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10770756|gb|AV621581.1|AV621581
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10770047|gb|AV620872.1|AV620872
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10770808|gb|AV621633.1|AV621633
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774037|gb|AV624860.1|AV624860
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10773106|gb|AV623929.1|AV623929
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|22061907|gb|BQ814531.1|BQ814531
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10771294|gb|AV622117.1|AV622117
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCT
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCT
EST: gi|10774559|gb|AV625382.1|AV625382
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|34992070|gb|CF565987.1|CF565987
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774768|gb|AV625591.1|AV625591
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10768502|gb|AV619327.1|AV619327
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10772952|gb|AV623775.1|AV623775
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10772059|gb|AV622882.1|AV622882
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGC
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGC
EST: gi|10791635|gb|AV629001.1|AV629001
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769057|gb|AV619882.1|AV619882
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|6543074|gb|AV388858.1|AV388858
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769504|gb|AV620329.1|AV620329
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10792984|gb|AV630350.1|AV630350
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49465578|gb|BP093491.1|BP093491
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|49465836|gb|BP093749.1|BP093749
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10793029|gb|AV630395.1|AV630395
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|23358956|gb|BU646776.1|BU646776
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10793772|gb|AV631138.1|AV631138
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769804|gb|AV620629.1|AV620629
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10772216|gb|AV623039.1|AV623039
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         AGTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769549|gb|AV620374.1|AV620374
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10774226|gb|AV625049.1|AV625049
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|23358732|gb|BU646552.1|BU646552
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10772808|gb|AV623631.1|AV623631
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10769927|gb|AV620752.1|AV620752
EST:     CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CCTGGGCTTCGTCGTGGGCGAGCAGCTGCAGGACTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
EST: gi|10771051|gb|AV621874.1|AV621874
EST:     CTTCCCCCTGTTTTTCA                         ACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG
genomic: CTTCCCCCTGTTTTTCAgtgagttcgg ... cacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccatgtctgccactgacccttcgcccttgctctttccaaccccacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCGGCCAGGGCTTCTGGGAGCCCCTGCTGATCGCCATCGGCGTGGCCGAGTC
             cactgac  putative branch site (score: 2)
                   cccttcgcccttgctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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cgtccgcacttgcacagcccagcagccctcgcttgcatgtatgtatgcccatgtctgccactgacccttcgcccttgctctttccaaccccacccaacagACTGGGACGGCCGCGTGTCTGGCCCCGCCATCTATCACTTCCAGCAGATCGGCCAGGGCTTCTGGGAGCCCCTGCTGATCGCCATCGGCGTGGCCGAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - -acttgca
- - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - atgccca
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