Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtggggcccgtgtgaggatgtggaagcggtgggcggcggataagggtaggggaagcccagggccaggccacaattcgcagccctaccacagcacacccagccttccctccctcggcatgcctgacgctgcgctccctgcctttcctctccctctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGCTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01013
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769474|gb|AV620299.1|AV620299
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10774912|gb|AV625735.1|AV625735
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|34990052|gb|CF563969.1|CF563969
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|14231650|gb|BG850466.1|BG850466
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10769783|gb|AV620608.1|AV620608
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10771365|gb|AV622188.1|AV622188
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10774280|gb|AV625103.1|AV625103
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10768905|gb|AV619730.1|AV619730
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|49459481|gb|BP087394.1|BP087394
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|49460094|gb|BP088007.1|BP088007
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10774766|gb|AV625589.1|AV625589
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|34992069|gb|CF565986.1|CF565986
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|49459783|gb|BP087696.1|BP087696
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|49458208|gb|BP086121.1|BP086121
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|22061907|gb|BQ814531.1|BQ814531
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|34992070|gb|CF565987.1|CF565987
EST:     ACCCCCTGGGCCTCAAGCC-ACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCCAGGAGCTGAACAACG
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACG
EST: gi|10768797|gb|AV619622.1|AV619622
EST:     CCCCCTGGGGCCTCAAGCCCACCGATCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: CCCCCT-GGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|6543074|gb|AV388858.1|AV388858
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|34992238|gb|CF566155.1|CF566155
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|34992068|gb|CF565985.1|CF565985
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10770831|gb|AV621656.1|AV621656
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|23358956|gb|BU646776.1|BU646776
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10772216|gb|AV623039.1|AV623039
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|14231649|gb|BG850465.1|BG850465
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|23358732|gb|BU646552.1|BU646552
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGACCA-CGGCCGCCTGGCCATGA
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGA
EST: gi|10769927|gb|AV620752.1|AV620752
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: gi|10771051|gb|AV621874.1|AV621874
EST:     ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAG                         ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTCAAGGTCATGCAGgtgcgtgggg ... ctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctcggcatgcctgacgctgcgctccctgcctttcctctccctctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGCTC
           gcctgac  putative branch site (score: 3)
                 cgctgcgctccctgcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtggggcccgtgtgaggatgtggaagcggtgggcggcggataagggtaggggaagcccagggccaggccacaattcgcagccctaccacagcacacccagccttccctccctcggcatgcctgacgctgcgctccctgcctttcctctccctctcccctcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC