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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcggagcccgggggcggcggctgctggtgcagctgtggatgtggacgtggccgtagaccggaagggtaggccactagggcctcatcgggtgagagctgtaaccagcagttgaaacgtccgcaacgcctcgacggcgacaggagtgtgttgttgctgggcctgacgtgttggtcctccctccgcagGCCTCATGCGACCCGCCCCACGTGCACGACATGCTCCACGTCATGTGCCACGAGCTCGAGTCCGTAGAGAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP00385
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239840573|gb|GR282909.1|GR282909
EST:     GCGCCTCCTTCAACACCACCTTCAACGAGAGCGGGCTGGTGGGGATACAG                         GCCTCATGCGACCCGCCCCACGTGCACGACATGCTCCACGTCATGTGCCAC
genomic: GCGCCTCCTTCAACACCACCTTCAACGAGAGCGGGCTGGTGGGGATACAGgtgcgtgcgg ... ccctccgcagGCCTCATGCGACCCGCCCCACGTGCACGACATGCTCCACGTCATGTGCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggcgacaggagtgtgttgttgctgggcctgacgtgttggtcctccctccgcagGCCTCATGCGACCCGCCCCACGTGCACGACATGCTCCACGTCATGTGCCACGAGCTCGAGTCCGTAGAGAA
                           gcctgac  putative branch site (score: 3)
                                     ttggtcctccctcc  putative PPT