1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctgaggctacccgcgctcagctgcaacggcgctgctgtggcacagcgcgttctggaggtaacctaccactatcgctgttgcgggcgctgccccacacagGCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCAACACACTGAGGATCATGAAGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP00385 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCATGTACATCAACTCGGGTAGCATCTACGAGAACGCCAGCAACTCAG GCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCAEST: gi|239840572|gb|GR282908.1|GR282908
genomic: AGGCATGTACATCAACTCGGGTAGCATCTACGAGAACGCCAGCAACTCAGgtttgtacct ... ccccacacagGCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCA
EST: AGGCATGTACATCAACTCGGGTAGCATCTACGAGAACGCCAGCAACTCAG GCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCA
genomic: AGGCATGTACATCAACTCGGGTAGCATCTACGAGAACGCCAGCAACTCAGgtttgtacct ... ccccacacagGCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCA
gcgcgttctggaggtaacctaccactatcgctgttgcgggcgctgccccacacagGCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCAACACACTGAGGATCATGAAGGAG
aggtaac putative branch site (score: 3)
ctgcccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgaggctacccgcgctcagctgcaacggcgctgctgtggcacagcgcgttctggaggtaacctaccactatcgctgttgcgggcgctgccccacacagGCTGCAGTGCGTTGCTGGAGTGTCTGGGCTTCAAGGCCACACAGCACCGCAACACACTGAGGATCATGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - tggcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctac