1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgcgtggggtgtggccgccccttacgacttcggctggacccctcgggcgaccaagtcaaacagacaccgaccttcagcctctatgttatgcgcctgtacccattcttgcagtctagaccttgcagaccgttcactgaccacaaagggcctaaacctttatggcccgtggacccgtgcctggacccctgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAGCTGCTGCTGGACTGCGTGCTGAACCCGGCGTTTGAGGAGGGCGAGGTGG
species | Chlamydomonas reinhardtii |
transcript | EDP00385 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAG ATGTCCTACACCATCGACTGCCEST: gi|23365424|gb|BU653244.1|BU653244
genomic: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAGgtgcgcgtgg ... tgatctgcagATGTCCTACACCATCGACTGCC
EST: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAG ATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAGEST: gi|49458443|gb|BP086356.1|BP086356
genomic: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAGgtgcgcgtgg ... tgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAG
EST: AGGTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAG ATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAGEST: gi|239840572|gb|GR282908.1|GR282908
genomic: AGGTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAGgtgcgcgtgg ... tgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAG
EST: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAG ATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAG
genomic: GTGGAGAAGTTTGGAAACACCATTGTGGCCAACGCGTCCCGAGAACAGgtgcgcgtgg ... tgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAG
aaagggcctaaacctttatggcccgtggacccgtgcctggacccctgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAGCTGCTGCTGGACTGCGTGCTGAACCCGGCGTTTGAGGAGGGCGAGGTGG
cccct CT-rich tract
tttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgtggggtgtggccgccccttacgacttcggctggacccctcgggcgaccaagtcaaacagacaccgaccttcagcctctatgttatgcgcctgtacccattcttgcagtctagaccttgcagaccgttcactgaccacaaagggcctaaacctttatggcccgtggacccgtgcctggacccctgatctgcagATGTCCTACACCATCGACTGCCTGAAGACGGGCTTCCCGGCGGCTCTGGAGCTGCTGCTGGACTGCGTGCTGAACCCGGCGTTTGAGGAGGGCGAGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG