1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aacacctaacgtacctccgtactcgtgcactcgccatgtggtgcttccgccagccgcaatccatgttccaagtcaaacgtacgcgcccctccccgcgcagGATCAGCGGGCGCACATACGTGGAGATGCTGGAGGCGGTGACTGCCGACGATGTGCGCAAGTTCGTGCAGCAGCTGCTGCGCAGCAAGCCTTCGCTGGCA
species | Chlamydomonas reinhardtii |
transcript | EDP00385 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCACCAGCGCCGAGGACATCGGCCGCCAGTACCTCACGTATGGGCACAG GATCAGCGGGCGCACATACGTGGAGATGCTGGAGGCGGTGACTGCCGACGA
genomic: GCCACCAGCGCCGAGGACATCGGCCGCCAGTACCTCACGTATGGGCACAGgtgggcatgg ... ccccgcgcagGATCAGCGGGCGCACATACGTGGAGATGCTGGAGGCGGTGACTGCCGACGA
tccgccagccgcaatccatgttccaagtcaaacgtacgcgcccctccccgcgcagGATCAGCGGGCGCACATACGTGGAGATGCTGGAGGCGGTGACTGCCGACGATGTGCGCAAGTTCGTGCAGCAGCTGCTGCGCAGCAAGCCTTCGCTGGCA
cgcccctcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacctaacgtacctccgtactcgtgcactcgccatgtggtgcttccgccagccgcaatccatgttccaagtcaaacgtacgcgcccctccccgcgcagGATCAGCGGGCGCACATACGTGGAGATGCTGGAGGCGGTGACTGCCGACGATGTGCGCAAGTTCGTGCAGCAGCTGCTGCGCAGCAAGCCTTCGCTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-acaccta
- - - - acgtacc
- - - - - - - - - - - - - gcactcg
- - - - - - - - - - - - - - - - - -atgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - -agccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtcaaa