1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtacagtgcgggttcccaccacctcgcaacacggatggcgtgctgaccatgcatccatgcctcgctctgttttaaaacataacaaacaaaaaacgcgcagGCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCCAACAGCTTCCTGGCGGCCACCGTGACCGCGGGCGGCAAGAG
species | Chlamydomonas reinhardtii |
transcript | EDO99098 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATCACCGCCGTGCAG GCCCCTAACAAEST: gi|161818894|gb|FC108814.1|FC108814
genomic: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATTACCGCCGTGCAGgtgggagcgc ... aaacgcgcagGCCCGTAACAA
EST: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATCACCGCCGTGCAG GCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTGGAGATGTTCTCCEST: gi|161799213|gb|FC082472.1|FC082472
genomic: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATTACCGCCGTGCAGgtgggagcgc ... aaacgcgcagGCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCC
EST: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATCACCGCCGTGCAG GCCCGTAACAACGCGCGCATEST: gi|161803118|gb|FC091889.1|FC091889
genomic: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATTACCGCCGTGCAGgtgggagcgc ... aaacgcgcagGCCCGTAACAACGCGCGCAT
EST: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATCACCGCCGTGCAG GCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTGGAGATGTTCTCC
genomic: CGCCCTCGCTCATGGCGGGAGCCGCGGCCTCGCTCATTACCGCCGTGCAGgtgggagcgc ... aaacgcgcagGCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCC
accatgcatccatgcctcgctctgttttaaaacataacaaacaaaaaacgcgcagGCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCCAACAGCTTCCTGGCGGCCACCGTGACCGCGGGCGGCAAGAG
ttttaaaacataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtgcgggttcccaccacctcgcaacacggatggcgtgctgaccatgcatccatgcctcgctctgttttaaaacataacaaacaaaaaacgcgcagGCCCGTAACAACGCGCGCATGGTGGTGTCGGGCTCTGTTGAGATGTTCTCCAACAGCTTCCTGGCGGCCACCGTGACCGCGGGCGGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - -ccaccac
- - - - - - - - - - - - - - acacgga
- - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca