1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgcgatgtcgttgactgaactgatcagccacatcatatagttggaagcgttctattaatttgcggacgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGGCCACAATGTGCTGCTGGGCGTCAACTCTGACGTTTCGGAAACCATGCG
species | Chlamydomonas reinhardtii |
transcript | EDO99098 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|161805684|gb|FC093652.1|FC093652
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|161818894|gb|FC108814.1|FC108814
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|8932799|gb|BE227560.1|BE227560
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|49461885|gb|BP089798.1|BP089798
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|161796948|gb|FC085631.1|FC085631
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|161799213|gb|FC082472.1|FC082472
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|49458654|gb|BP086567.1|BP086567
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|161803118|gb|FC091889.1|FC091889
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|15696714|gb|BI721019.1|BI721019
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGEST: gi|9210239|gb|BE337154.1|BE337154
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
tgatcagccacatcatatagttggaagcgttctattaatttgcggacgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGGCCACAATGTGCTGCTGGGCGTCAACTCTGACGTTTCGGAAACCATGCG
tattaat putative branch site (score: 2)
ttctattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgatgtcgttgactgaactgatcagccacatcatatagttggaagcgttctattaatttgcggacgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTGGCCACAATGTGCTGCTGGGCGTCAACTCTGACGTTTCGGAAACCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT