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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCGACATCAAGGGGTACAAGGACTCTGGTCTGAAGCTCCGGGAGTATGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatgtcgttgactgaactgatcagccacatcatatagttggaagcgttctattaatttgcggacgcgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99098
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365718|gb|BU653538.1|BU653538
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|161805684|gb|FC093652.1|FC093652
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|161818894|gb|FC108814.1|FC108814
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|8932799|gb|BE227560.1|BE227560
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|49461885|gb|BP089798.1|BP089798
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|161796948|gb|FC085631.1|FC085631
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|161799213|gb|FC082472.1|FC082472
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|49458654|gb|BP086567.1|BP086567
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|161803118|gb|FC091889.1|FC091889
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|15696714|gb|BI721019.1|BI721019
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
EST: gi|9210239|gb|BE337154.1|BE337154
EST:     TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAG                         GCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG
genomic: TGGGACCTGGCTCTACGATCACCTCATTCTGTTCGCGCCCAAAGCGGAAGgtgcgcgatg ... acgcgcacagGCTTCGGCGGCAGCATCGACCAGCAGACCATCCTCGACTTTGTGGACTCTG