1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCGACGCCAACGCCAACACCCAGACCGTGCCCATCACCGCCATCCCCGATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgtttgggatggaggggggcctggagcgcggttcctccttacgcagattcgggatgcagggtgtggggagccgtgtgcggggcaggagatgcg...
species | Chlamydomonas reinhardtii |
transcript | EDO98586 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGEST: gi|161791377|gb|FC077974.1|FC077974
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTG
EST: TGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTTCA-C GACGCCCTGGCCGAEST: gi|161816099|gb|FC103794.1|FC103794
genomic: TGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTT-CAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGA
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161806004|gb|FC089526.1|FC089526
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|22062636|gb|BQ814877.1|BQ814877
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGCCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGTCCCAEST: gi|161808945|gb|FC094390.1|FC094390
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCA
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161815736|gb|FC101851.1|FC101851
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161797540|gb|FC086028.1|FC086028
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161803417|gb|FC093046.1|FC093046
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161792900|gb|FC082154.1|FC082154
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161812927|gb|FC095129.1|FC095129
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCEST: gi|161810630|gb|FC094209.1|FC094209
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCC
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161808389|gb|FC098462.1|FC098462
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161792854|gb|FC082108.1|FC082108
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161791664|gb|FC078299.1|FC078299
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|239842032|gb|GR283889.1|GR283889
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|15372888|gb|BI532314.1|BI532314
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|49459990|gb|BP087903.1|BP087903
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161814693|gb|FC102394.1|FC102394
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|239841418|gb|GR283275.1|GR283275
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161812995|gb|FC094313.1|FC094313
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|9441323|gb|BE441686.1|BE441686
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCEST: gi|161801398|gb|FC088518.1|FC088518
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCC
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|15371560|gb|BI530986.1|BI530986
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161823322|gb|FC110116.1|FC110116
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161817186|gb|FC101594.1|FC101594
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTGEST: gi|161823089|gb|FC107387.1|FC107387
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
EST: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAAC GACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
genomic: ATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgt ... tccacaacagGACGCCCTGGCCGACGCCAAGACCGTTGTGTGGAACGGCCCCATGGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGACGCCAACGCCAACACCCAGACCGTGCCCATCACCGCCATCCCCGATGGCTGGATGGGTCTGGACATTGGCCCGGACTCCGTCAAGACCTTCAACgtgagtgtgtttgggatggaggggggcctggagcgcggttcctccttacgcagattcgggatgcagggtgtggggagccgtgtgcggggcaggagatgcg
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