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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTCACCTTCTACAAGGCCCGCGGCCTGAAGGTGGGCTCCTCCCTGGTTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgttagcgagcgagcgcgacatgatgggaatcgcaggcggccgctgtttggcaaatgagggatcggttccgttgggtggatgggggctgcgctatctgcagcggtggaagggcgtatgcaaaggtcacaagcaactcttcctgacccaatactgctccttcctggttgttggtgcgcaccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98586
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431012|gb|BI996238.1|BI996238
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|10778626|gb|AV635306.1|AV635306
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161791377|gb|FC077974.1|FC077974
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161816099|gb|FC103794.1|FC103794
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161795111|gb|FC078255.1|FC078255
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCA-G                         GCCAANGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGT
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGT
EST: gi|161806004|gb|FC089526.1|FC089526
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|22062636|gb|BQ814877.1|BQ814877
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161808945|gb|FC094390.1|FC094390
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161808380|gb|FC098453.1|FC098453
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161815736|gb|FC101851.1|FC101851
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161797540|gb|FC086028.1|FC086028
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161803417|gb|FC093046.1|FC093046
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161792900|gb|FC082154.1|FC082154
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161812927|gb|FC095129.1|FC095129
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161822387|gb|FC106808.1|FC106808
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|9028128|gb|BE238168.1|BE238168
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161810630|gb|FC094209.1|FC094209
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161808389|gb|FC098462.1|FC098462
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161792854|gb|FC082108.1|FC082108
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161791664|gb|FC078299.1|FC078299
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|15372888|gb|BI532314.1|BI532314
EST:     GATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: GATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|49459990|gb|BP087903.1|BP087903
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161795396|gb|FC078553.1|FC078553
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161814693|gb|FC102394.1|FC102394
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|7686923|gb|AW757571.1|AW757571
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|9441323|gb|BE441686.1|BE441686
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAACTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161801398|gb|FC088518.1|FC088518
EST:     TGGAGGACGACAAGATCTAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|15371560|gb|BI530986.1|BI530986
EST:     TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161823322|gb|FC110116.1|FC110116
EST:     CAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: CAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161817186|gb|FC101594.1|FC101594
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
EST: gi|161823089|gb|FC107387.1|FC107387
EST:     TGGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAG                         GCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG
genomic: TTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgt ... cgcaccacagGCCAAGGGTGTGCAGCTGCTGCTGCCCACCGACGTGGTGGTGGCCGACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCTTCACCTTCTACAAGGCCCGCGGCCTGAAGGTGGGCTCCTCCCTGGTTGAGGACGACAAGATCGAGCTGGCCAAGAAGCTGGAGGAGATGGCCAAGgtgcgtgtgttagcgagcgagcgcgacatgatgggaatcgcaggcggccgctgtttggcaaatgagggatcggttccgttgggtggatgggggctgcgctatctgcagcggtggaagggcgtatgcaaaggtcacaagcaactcttcctgacccaatactgctccttcctggttgttggtgcgcaccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG