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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttccgtcaatcgcctgcgccctggcatgtttgttgactcaccctccccaccctcccctcccttctccctgcctccccaccaccgtacaacacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCACCGCGCCCACGCCTCCACCGAGGGTGTGACCAAGTTCCTGAAGCCCTCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98586
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161823510|gb|FC108510.1|FC108510
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161791377|gb|FC077974.1|FC077974
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161795111|gb|FC078255.1|FC078255
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161806004|gb|FC089526.1|FC089526
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161808945|gb|FC094390.1|FC094390
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161808380|gb|FC098453.1|FC098453
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161797540|gb|FC086028.1|FC086028
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161812620|gb|FC099437.1|FC099437
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161803417|gb|FC093046.1|FC093046
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161799718|gb|FC085252.1|FC085252
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGGACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161792900|gb|FC082154.1|FC082154
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|239842030|gb|GR283887.1|GR283887
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCCGACCTGTACGTNAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161812927|gb|FC095129.1|FC095129
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161822387|gb|FC106808.1|FC106808
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161810630|gb|FC094209.1|FC094209
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161792854|gb|FC082108.1|FC082108
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161791664|gb|FC078299.1|FC078299
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161813926|gb|FC104552.1|FC104552
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161802603|gb|FC089099.1|FC089099
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161795396|gb|FC078553.1|FC078553
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161814693|gb|FC102394.1|FC102394
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161820324|gb|FC105889.1|FC105889
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|7686923|gb|AW757571.1|AW757571
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|9441323|gb|BE441686.1|BE441686
EST:     GAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: GAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|10127475|gb|BE726179.1|BE726179
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|161801398|gb|FC088518.1|FC088518
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCTGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
EST: gi|15373411|gb|BI532837.1|BI532837
EST:     TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAG                         CTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC
genomic: TCCGCTTCTACAAGGAGGAGGAGAAGAACGAGCCCGAGTTCGCCAAGAAGgtgaggactg ... acacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttccgtcaatcgcctgcgccctggcatgtttgttgactcaccctccccaccctcccctcccttctccctgcctccccaccaccgtacaacacacacagCTGGCCGCCAACGCCGACCTGTACGTGAACGACGCGTTCGGCACTGCCCACCGCGCCCACGCCTCCACCGAGGGTGTGACCAAGTTCCTGAAGCCCTCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - caatcgc
- - - - - - - - - - - - - - tgtttgt