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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaacgtatgcgggagtacgtgtggcccaagggaagaatcacacacagcctgtgggtgcgtttgtgttaggaaagcactaggggccagtgtatatgtgtgtgtatgcgcacacagtacgcgcatgcacgcgcaataccggtatcctacactattcctcgccaaagcgctctttaacccacgtgcgctcccctcagGCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGCGGCATCGACCCCAAGCCCATGTACGAGACGCTGCGGCGGGGGCTGCACG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98406
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437036|gb|BM002256.1|BM002256
EST:     CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAG                         GCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC
genomic: CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAGgtacagaacg ... ctcccctcagGCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC
EST: gi|15704517|gb|BI728822.1|BI728822
EST:     CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAG                         GCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC
genomic: CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAGgtacagaacg ... ctcccctcagGCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC
EST: gi|49469805|gb|BP097666.1|BP097666
EST:     CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAG                         GCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC
genomic: CCCGCGAGCTGGCCACACAGACGTACGAGATCGCCGACATGTACTGCCAGgtacagaacg ... ctcccctcagGCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctacactattcctcgccaaagcgctctttaacccacgtgcgctcccctcagGCGCTGAACGCGGACCGCTACCCGGAGGTGCGGGTGATGCTGTGCATCGGCGGCATCGACCCCAAGCCCATGTACGAGACGCTGCGGCGGGGGCTGCACG
                             ctttaac  putative branch site (score: 3)
                                           cgctcccctc  putative PPT
                            tctttaa  TA-rich tract