1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...cttgtgaaacgcccgtcactcctccgtccgtgctatactcctgttcctggctacgcctccacttcttaaatagtcatgaatgtaatccccctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAGCCAAGCTGCCGTATCTGTTGGAGTGCCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO98406 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAG GTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAGEST: gi|15704517|gb|BI728822.1|BI728822
genomic: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAGgtgaggggca ... ctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAG
EST: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAG GTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCEST: gi|16429021|gb|BI994247.1|BI994247
genomic: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAGgtgaggggca ... ctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTC
EST: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAG GTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAG
genomic: TGCGGAGAGTGCGCTGGTGGACCCAGTGGAGGTCAACGTGGGCCGAGCAGgtgaggggca ... ctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAG
cctggctacgcctccacttcttaaatagtcatgaatgtaatccccctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAGCCAAGCTGCCGTATCTGTTGGAGTGCCTGCAG
tccccctgt CT-rich tract
ttcttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgaaacgcccgtcactcctccgtccgtgctatactcctgttcctggctacgcctccacttcttaaatagtcatgaatgtaatccccctgtgtgcagGTGCCGCCAACATGGACGTGATCCAGGAGGTGGAGTACGTCAAGGAGGAAGCCAAGCTGCCGTATCTGTTGGAGTGCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - aaacgcc
- - - - - - - -tcactcc
- - - - - - - - - - - - - - - - - atactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt