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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGCAAGGGCATCAAGAAGCCCACGCAGATCCAGATGCAAGGCCTGCCGGTGGCGCTCAGCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCGgtgggtcgggaaggcatggttgcgggtgtagggtgtgtttcgggaagaaactgtggagacggtggacgtgtgtgcagccacttgcagccccgtcattatgcagctgccaaacccctgcccgctcgacataaattcttatgcttatctaccctcaacgccgctcatcccttgtgatcaccgccacacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98406
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437036|gb|BM002256.1|BM002256
EST:     GCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCG                         GCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG
genomic: GCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCGgtgggtcggg ... cgccacacagGCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG
EST: gi|15704517|gb|BI728822.1|BI728822
EST:     GCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCG                         GCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG
genomic: GCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCGgtgggtcggg ... cgccacacagGCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG
EST: gi|49469805|gb|BP097666.1|BP097666
EST:     GGTGGCGCTCAGCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCG                         GCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG
genomic: GGTGGCGCTCAGCGGCCGCGACATGATCGGCATCGCGTCCACCGGAAGCGgtgggtcggg ... cgccacacagGCAAGACGCTGGTGTTCACGCTGCCCATGATCCTCATCGCGCTGCAG