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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTTTGAGGACGACGTGCGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAGgtgcgcggggttggaggaggagagggttcctcaggatgacggggcgcttgcgattgggtcagccccaccagtagctggcctcgtgtgctcgtgacccggcatgcaagtacccgtgcttatcaatatgttgcccctctttttcgctctcatag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98406
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437036|gb|BM002256.1|BM002256
EST:     CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAG                         CGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
genomic: CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAGgtgcgcgggg ... gctctcatagCGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
EST: gi|10775218|gb|AV631898.1|AV631898
EST:     CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAG                         CGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
genomic: CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAGgtgcgcgggg ... gctctcatagCGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
EST: gi|15704517|gb|BI728822.1|BI728822
EST:     CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAG                         CGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
genomic: CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAGgtgcgcgggg ... gctctcatagCGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
EST: gi|16429021|gb|BI994247.1|BI994247
EST:     CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAG                         CGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA
genomic: CGCGACATTCTGTCCTTTTTCAGGGGGCAGCGGCAGACACTCATGTTCAGgtgcgcgggg ... gctctcatagCGCGACCATGCCCGCCAAGATCAAGGCGTTTGCGGAGAGTGCGCTGGTGGA