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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgacggttgctctggggcgaacggcttaagggtgcgaatgcggtggagggccgttgtaggggtgatgggtggggatggcacattcgaggctgcatagctcggagctgcttgcaagcgcatgctcgactcatgtcaggcagcacccacttctcacagGTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGTGTACAAAGCGGTGCACCGCCTCACCGGCATCGCGTACGCAGTGAAAACC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97272
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10793427|gb|AV630793.1|AV630793
EST:     TTCCAGGCGTCACAGTCCTGCCTCAACCGCGGCAACTACAGCCGCTTCCT                         GTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGT
genomic: TTCCAGGCGTCACAGTCCTGCCTCAACCGCGGCAACTACAGCCGCTTCCTgtgagtgacg ... cttctcacagGTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGT
EST: gi|10793426|gb|AV630792.1|AV630792
EST:     TTCCAGGCGTCACAGTCCTGCCTCAACCGCGGCAACTACAGCCGCTTCCT                         GTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGT
genomic: TTCCAGGCGTCACAGTCCTGCCTCAACCGCGGCAACTACAGCCGCTTCCTgtgagtgacg ... cttctcacagGTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctgcttgcaagcgcatgctcgactcatgtcaggcagcacccacttctcacagGTGGGACTACCACCAGGAGGCGGAGCTGGGCCACGGCAATTTCAGCAAGGTGTACAAAGCGGTGCACCGCCTCACCGGCATCGCGTACGCAGTGAAAACC
                                         cccacttctc  CT-rich tract