1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGAGCCTTCAACCATGCAGGTGGACGACGACGTGAGCCGCTCGCCAGCACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAGgtgcgtcaggctatttggctgggaagctatgagcagttggacgcaacgtgtggccgcagtgcttacaccgctcatcactttgcgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO97272 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAG GCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTGEST: gi|10793427|gb|AV630793.1|AV630793
genomic: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAGgtgcgtcagg ... ttgcgcgcagGCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTG
EST: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAG GCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTGEST: gi|10793426|gb|AV630792.1|AV630792
genomic: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAGgtgcgtcagg ... ttgcgcgcagGCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTG
EST: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAG GCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTG
genomic: ACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAGgtgcgtcagg ... ttgcgcgcagGCAACATGGACGATGAGGTCAGCAGCCAGAGCCAGAGCCAAAGTCGGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGAGCCTTCAACCATGCAGGTGGACGACGACGTGAGCCGCTCGCCAGCACCCTCGCCCCGCGCAATGAAGCGGCCACGGCCGCTGAAGGTGCTGCCAGgtgcgtcaggctatttggctgggaagctatgagcagttggacgcaacgtgtggccgcagtgcttacaccgctcatcactttgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC