Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgatccgcatgtgcttacttgttatattgcgacataggcagcatgcagctcttgtcatgatggcttgactgctgccctaccttgcgggtgcgcagGCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCAACCCCTACCTGGTGCGGGCGGATGACGACAACCACGTGTTCCAGGCGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97272
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787059|gb|AV643731.1|AV643731
EST:     CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAG                         GCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA
genomic: CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAGgtacgtgatc ... gggtgcgcagGCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA
EST: gi|10793427|gb|AV630793.1|AV630793
EST:     CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAG                         GCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA
genomic: CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAGgtacgtgatc ... gggtgcgcagGCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA
EST: gi|10793426|gb|AV630792.1|AV630792
EST:     CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAG                         GCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA
genomic: CCAAAGTCGGTCTGTCGGCGAGCCCAGCACGTGTAGCAAGGCGCTTTCAGgtacgtgatc ... gggtgcgcagGCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgcagctcttgtcatgatggcttgactgctgccctaccttgcgggtgcgcagGCCGGCCGCCCATCCCCAAGCTGCGCGAGGTGCAGCCTCCCATGCCGCGCAACCCCTACCTGGTGCGGGCGGATGACGACAACCACGTGTTCCAGGCGTC
                      gcttgac  putative branch site (score: 4)