1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCGCTGGCCGCGGCGGACATGCTGGAGCGCGATGGCGTGTCCACCACCGTCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcaccgcgtatctggatgcagtctcttatcgcagggtcgtatcgcatgtactctgcagggggctgtcatgctagcacatcgctctggtgcccacacgggtttcgttaagtgtgtatatcccgcagcctgcccatgaccctcgccgtgcacggaccatctggatgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO97255 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGTEST: gi|7593669|gb|AW707920.1|AW707920
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
EST: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGTEST: gi|161792053|gb|FC079760.1|FC079760
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
EST: TCATTGACGCGCGCTTCTGCAAGCCCCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGTEST: gi|161794372|gb|FC079921.1|FC079921
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
EST: TCATTGACGCGCGCTTCTGCAAGCCCCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGTEST: gi|161823512|gb|FC108512.1|FC108512
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
EST: TCATTGACGCGCGCTTCTGCAAGCCCCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGTEST: gi|161803989|gb|FC093865.1|FC093865
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
EST: TCATTGACGCGCGCTTCTGCAAGCCCCTGGACACCAAGCTGATCCGCTCG GCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
genomic: TCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcac ... ggatgcgcagGCTGCCAAGGAGCACCCTGTCATGATCACCATCGAGGAGGGCTCCGTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGGCCGCGGCGGACATGCTGGAGCGCGATGGCGTGTCCACCACCGTCATTGACGCGCGCTTCTGCAAGCCTCTGGACACCAAGCTGATCCGCTCGgtgggtgcaccgcgtatctggatgcagtctcttatcgcagggtcgtatcgcatgtactctgcagggggctgtcatgctagcacatcgctctggtgcccacacgggtttcgttaagtgtgtatatcccgcagcctgcccatgaccctcgccgtgcacggaccatctggatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT