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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttggcgttgtaaggcggccgctttgcccgggcgaattcctgattctcacaatcgcgcagGCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACAGCTCCACCTCGATTTCGGCGGCTCTGGGTATGGCGGTGGGCCGCGACGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97255
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469828|gb|BP097689.1|BP097689
EST:     TGGCCGTCGCAAGGGTATGGCCACGATTCGCCAGACCAACGGCCTTTCGG                         GCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA
genomic: TGGCCGTCGCAAGGGTATGGCCACGATTCGCCAGACCAACGGCCTTTCGGgtgagttggc ... aatcgcgcagGCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA
EST: gi|6544751|gb|AV390535.1|AV390535
EST:     GCCAGACCAACGGCCTTTCGG                         GCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA
genomic: GCCAGACCAACGGCCTTTCGGgtgagttggc ... aatcgcgcagGCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA
EST: gi|8401100|gb|BE056734.1|BE056734
EST:     GCAAGGGTATGGCCACGATTCGCCAGACCAACGGCCTTTCGG                         GCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA
genomic: GCAAGGGTATGGCCACGATTCGCCAGACCAACGGCCTTTCGGgtgagttggc ... aatcgcgcagGCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgtaaggcggccgctttgcccgggcgaattcctgattctcacaatcgcgcagGCTTCACGAAGCGCGACGAGAGCGAGTACGACCCTTTCGGCGCTGGCCACAGCTCCACCTCGATTTCGGCGGCTCTGGGTATGGCGGTGGGCCGCGACGT
                                      ttctcac  putative branch site (score: 2)