1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acaggcacagcagtaagcatgccgcggacatatactacggtatgcacgctcttctccactgacaagtgccccgcctctcctcttcccaatgcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTACATCGACCACGGCGACTACCGCGACCAGCTGGCCATGGCCGGCCTCAC
species | Chlamydomonas reinhardtii |
transcript | EDO97255 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGG GCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTEST: gi|23363350|gb|BU651170.1|BU651170
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGG GCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTEST: gi|161792053|gb|FC079760.1|FC079760
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTTGCACTGGAGG GCCTGCTGGACGGCGGGCTCAAGEST: gi|161794372|gb|FC079921.1|FC079921
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAG
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTTGCACTGGAGG GCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTEST: gi|161823512|gb|FC108512.1|FC108512
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTTGCACTGGAGG GCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTEST: gi|161803989|gb|FC093865.1|FC093865
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
EST: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTTGCACTGGAGG GCCCGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
genomic: CTCCGTGGGTGGCTTCGCTGCGCACGTGATGCAGTTCCTCGCACTGGAGGgtaagcggcg ... gcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCT
acgctcttctccactgacaagtgccccgcctctcctcttcccaatgcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTACATCGACCACGGCGACTACCGCGACCAGCTGGCCATGGCCGGCCTCAC
cactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaggcacagcagtaagcatgccgcggacatatactacggtatgcacgctcttctccactgacaagtgccccgcctctcctcttcccaatgcggtcgcagGCCTGCTGGACGGCGGGCTCAAGTTCCGGCCCATGACGCTGCCGGACCGCTACATCGACCACGGCGACTACCGCGACCAGCTGGCCATGGCCGGCCTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
acaggca
- - - - - - - - gcatgcc
- - - - - - - - - - - - - -acatata
- - - - - - - - - - - - - - - - - - - - -atgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaca