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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggggcgggttggggcggtggagggggagaggtcaggtgggtgttttccgtgtccaagtgaagaacgggacgacgggcgctgctcctgactcggcgtgctgccttggccttcgacacgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAAGTCGCACCTGGGTCCGGGCTCCTACGACTACAAGGACGCCCGCAGCGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97021
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127309|gb|BE726013.1|BE726013
EST:     AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAG                         GAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
genomic: AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAGgtgggggcgg ... acgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
EST: gi|161808877|gb|FC099535.1|FC099535
EST:     AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTATAG                         GAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
genomic: AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAGgtgggggcgg ... acgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
EST: gi|161811725|gb|FC097462.1|FC097462
EST:     AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTATAG                         GAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
genomic: AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAGgtgggggcgg ... acgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
EST: gi|15693353|gb|BI717658.1|BI717658
EST:     AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAG                         GAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
genomic: AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAGgtgggggcgg ... acgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
EST: gi|14240027|gb|BG858843.1|BG858843
EST:     AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAG                         GAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA
genomic: AACAAGGCCTCGCTGTACACCGCGGTCGTCAAGTCGCCCGTGTCCTACAGgtgggggcgg ... acgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgacgggcgctgctcctgactcggcgtgctgccttggccttcgacacgccgacagGAACATGGGCGCGGGTGCGAGCCACTATCATGCGCGGCAGGACGTCTACAAGTCGCACCTGGGTCCGGGCTCCTACGACTACAAGGACGCCCGCAGCGTG
             tcctgac  putative branch site (score: 2)