1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcgcctgggtgctccagcctcttgggggccaacccggtggggctcaccccgtaggcttaacccgactactacccgctgctgcgcttatctgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGAGGCGCCGCGGGAGAGCACGCCCTTCGGCGCTTATGACATCGACCGGGC
species | Chlamydomonas reinhardtii |
transcript | EDO97021 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGEST: gi|22076259|gb|BQ825035.1|BQ825035
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGEST: gi|161811725|gb|FC097462.1|FC097462
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGEST: gi|15693353|gb|BI717658.1|BI717658
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGEST: gi|10127422|gb|BE726126.1|BE726126
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGEST: gi|8932978|gb|BE227739.1|BE227739
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
EST: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAG TATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
genomic: CTATGACACAGATGCTGGACGCAAAATGTCACTGGCGACTTCAGTTACAGgtggggctga ... tgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTG
caccccgtaggcttaacccgactactacccgctgctgcgcttatctgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGAGGCGCCGCGGGAGAGCACGCCCTTCGGCGCTTATGACATCGACCGGGC
gcttaac putative branch site (score: 3)
tctgtctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgcctgggtgctccagcctcttgggggccaacccggtggggctcaccccgtaggcttaacccgactactacccgctgctgcgcttatctgtctcgcagTATCACCTCACCGTTATTCTATAATGCGGTCAACTGCACCACGCTTAGCTGAGGCGCCGCGGGAGAGCACGCCCTTCGGCGCTTATGACATCGACCGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA