Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCACCACGCTTAGCTGAGGCGCCGCGGGAGAGCACGCCCTTCGGCGCTTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagcacgctgcacgttgtggggtagaccggggtagggaatgggtggcagcttgaggcagcacctgctgttgcctttgccgtatgcacacgggtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97021
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808877|gb|FC099535.1|FC099535
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTTTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
EST: gi|22076259|gb|BQ825035.1|BQ825035
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
EST: gi|161811725|gb|FC097462.1|FC097462
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTTTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
EST: gi|15693353|gb|BI717658.1|BI717658
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
EST: gi|10127422|gb|BE726126.1|BE726126
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
EST: gi|8932978|gb|BE227739.1|BE227739
EST:     TTATGACATCGACCGGGCACNNNNNNNGGGCCTGGAGTCCACGTCACGAG                         ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC
genomic: TTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagc ... cttcctgcagACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGCACCACGCTTAGCTGAGGCGCCGCGGGAGAGCACGCCCTTCGGCGCTTATGACATCGACCGGGCACAAAAAAAGGGCCTGGAGTCCACGTCACGAGgtgcggtagcacgctgcacgttgtggggtagaccggggtagggaatgggtggcagcttgaggcagcacctgctgttgcctttgccgtatgcacacgggtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaca