1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCCAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgcatggccgtgacagtgtgtgcgggcgagttgttatgggccattccaaaggcaagaggtggcagtccgttgggtgacggcagaagcgcgcag...
species | Chlamydomonas reinhardtii |
transcript | EDO97021 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|161808877|gb|FC099535.1|FC099535
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|22076259|gb|BQ825035.1|BQ825035
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|161811725|gb|FC097462.1|FC097462
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|15693353|gb|BI717658.1|BI717658
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|10127422|gb|BE726126.1|BE726126
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|8932978|gb|BE227739.1|BE227739
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGACCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCCEST: gi|14240027|gb|BG858843.1|BG858843
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
EST: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACG GCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
genomic: CAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgc ... cccactgcagGCTGAAGGATCACGCGCCTGTGGACATCGCCAAAGCGCTGCAGACCACGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACACGGAGATTCTATTCGTCGGTATTTGACTCCCAGGTATCTCGGTTCCAGCGGCCCTGGAGCTCACCGGTGACAGACGCCTTTTATGACCCGGAACGgtgcgtttgcatggccgtgacagtgtgtgcgggcgagttgttatgggccattccaaaggcaagaggtggcagtccgttgggtgacggcagaagcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtga