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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattctttgattgatttgggtgtaaacaacacgtcatgtttctagtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96278
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785083|gb|AV641755.1|AV641755
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|15692040|gb|BI716345.1|BI716345
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|9210211|gb|BE337126.1|BE337126
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|15697956|gb|BI722261.1|BI722261
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|10778487|gb|AV635167.1|AV635167
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|10793517|gb|AV630883.1|AV630883
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|9264045|gb|BE352192.1|BE352192
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
EST: gi|15372965|gb|BI532391.1|BI532391
EST:     CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG                         GTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT
genomic: CAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAGgtgggattct ... tctagtgcagGTGTACATATCTCAAGGATCTTTTGCGCGATGGTCGAATGAATCATGGGCT