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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTTATTTTGACGAACAACATGGATTTCCTATCAATTTTGACCATGGGGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatttctttaatttgattaaggatttacacattaatactatttcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96278
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785083|gb|AV641755.1|AV641755
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|15692040|gb|BI716345.1|BI716345
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTNAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|9210211|gb|BE337126.1|BE337126
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|10773295|gb|AV624118.1|AV624118
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTG
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTG
EST: gi|10778487|gb|AV635167.1|AV635167
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|10793517|gb|AV630883.1|AV630883
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|9264045|gb|BE352192.1|BE352192
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|15372965|gb|BI532391.1|BI532391
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGTTATTTTGACGAACAACATGGATTTCCTATCAATTTTGACCATGGGGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatttctttaatttgattaaggatttacacattaatactatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA