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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttatttctttaatttgattaaggatttacacattaatactatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96278
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785083|gb|AV641755.1|AV641755
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|15692040|gb|BI716345.1|BI716345
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTNAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|9210211|gb|BE337126.1|BE337126
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|10773295|gb|AV624118.1|AV624118
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTG
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTG
EST: gi|10778487|gb|AV635167.1|AV635167
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|10793517|gb|AV630883.1|AV630883
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|9264045|gb|BE352192.1|BE352192
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
EST: gi|15372965|gb|BI532391.1|BI532391
EST:     GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTG                         GCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA
genomic: GGCTGCAGCTCAGGAAGTGTCCATTAGTTTTGCAAGGCTATACAGTCCTGgtgggttatt ... actatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgggttatttctttaatttgattaaggatttacacattaatactatttcagGCAGTGAATACGCGGTTCTGTGGCCGTATTATCCTCAAGAGATTCTGTCAAGACAGGGCCTTCTTGATGAGAAAAGTTTTATCGCTAAAAGCAGTGAG
                                      cattaat  putative branch site (score: 3)
                                              ctatttc  CT-rich tract
        ttatttctttaatttg  TA-rich tract