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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatatctatccatctttattacacgaaacattttcaataacttattacacttttaagaagcggatacatatgatttatagGAAGTCACACCATTGGAAACTCGAGGTGCACAAGTTTCCGACAGAGGTTATACAATCAATCCGGCAACGGAAAGCCTGATATGACTCTTAGCCAATACTA

Basic information

species Arabidopsis thaliana
transcript AT5G66390.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037719|gb|BP795989.2|BP795989
EST:     TAAGTTCAAGCGTCAAGGCCTTGATCTCGTCGATCTTGTCTCCCTCTCAG                         GAAGTCACACCATTGGAAACTCGAGG
genomic: TAAGTTCAAGCGTCAAGGCCTTGATCTCGTCGATCTTGTCTCCCTCTCAGgtatacatat ... tgatttatagGAAGTCACACCATTGGAAACTCGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacattttcaataacttattacacttttaagaagcggatacatatgatttatagGAAGTCACACCATTGGAAACTCGAGGTGCACAAGTTTCCGACAGAGGTTATACAATCAATCCGGCAACGGAAAGCCTGATATGACTCTTAGCCAATACTA
         caataac  putative branch site (score: 2)
          aataacttattacact  TA-rich tract