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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAGATTGTTCAGTCCATTGTCGCTAAAGCATTCGAACATGATCCTCGCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctcaagcttagcaaaatttcgtaacgtttaaaaacatacggaaattttccaatcttaatatatttttatccttgtgatatatatttgtgctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G66390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66390.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G37630.1 (Glycine max), 5'ss of exon 1
TCAAGAGATTGTTCAGTCCATTGTCGCTAAAGCATTCGAACATGATCCTCGCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctc-aagcttagca------aaatttcgtaacgtt-taaaaacatacggaaattttccaatcttaatatatttttatc-cttgtgatatatatttgtgctgcag
|||||||||||| || ||||| || || || ||| | | | | || || |||||| |||| || ||||||||||| |||||||| || ||||| ||||||||||| |    || ||      |||   | |||| |  | || | | |  |||| ||   | |  |   |||  | | |    | |||    |  || ||      
TCAAGAGATTGTCCAATCCATCGTTGCCAAGGCAGTGGCAAAAGAACCCCGCATGGCTGCTTCGTTGCTCAGACTACATTTCCATGATTGTTTTGTCAAGgtctctatatataacagataacaaaccccataacttagttaatataaatagaaaattcatagtagtggcataactatctgatctatgagtcttgcttatg------

upper sequence: AT5G66390.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G07670.1 (Glycine max), 5'ss of exon 1
TCAAGAGATTGTTCAGTCCATTGTCGCTAAAGCATTCGAACATGATCCTCGCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctc-aagcttagca-aaatttcgtaacgtttaaaaacata-cggaaattttccaatcttaatatatttttatccttgtg-atatatatttgtgctgcag
|||||||||||| || ||||| || || || ||  | | | | || || |||||| |||| || ||||||||||| |||||||| || ||||| ||||||||||| |    || || |||       |  ||||   || ||   || |  ||  | |||  || | ||||| ||    |  ||   |  ||   || || 
TCAAGAGATTGTCCAATCCATCGTTGCCAAGGCTGTGGCAAAAGAACCCCGCATGGCTGCTTCGTTGCTCAGACTACATTTCCATGATTGTTTTGTCAAGgtctctatatataacagaaaacaaactatctttatgcacctagttgacaccttttattctctatctttttttgtcacattatatcacttcttacactcca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874818|gb|AU235649.1|AU235649
EST:     GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAG                         GGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
genomic: GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctcaagct ... tgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
EST: gi|152037719|gb|BP795989.2|BP795989
EST:     GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAG                         GGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
genomic: GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctcaagct ... tgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG