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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcaagcttagcaaaatttcgtaacgtttaaaaacatacggaaattttccaatcttaatatatttttatccttgtgatatatatttgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAGAAACGATCAAACCCTAACAGAAACTCAGCCCGTGGTTTCGAACTCATCG

Basic information

species Arabidopsis thaliana
transcript AT5G66390.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874818|gb|AU235649.1|AU235649
EST:     GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAG                         GGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
genomic: GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctcaagct ... tgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
EST: gi|152037719|gb|BP795989.2|BP795989
EST:     GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAG                         GGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG
genomic: GCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGgtctcaagct ... tgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattttccaatcttaatatatttttatccttgtgatatatatttgtgctgcagGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAGAAACGATCAAACCCTAACAGAAACTCAGCCCGTGGTTTCGAACTCATCG
            tcttaat  putative branch site (score: 3)
          aatcttaatatatttt  TA-rich tract