1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTCATCGAGGAAATCAAACATGCCTTAGAACAAGAGTGTCCTGAAACAGTTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTgtaagtactcatcacaattcactacacacaaaattagttgattattatcaataatttgacaaatgaaataacag
species | Arabidopsis thaliana |
transcript | AT5G66390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATT ACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGAEST: gi|124886275|gb|EH965177.1|EH965177
genomic: TTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTgtaagtactc ... gaaataacagACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGA
EST: GATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATT ACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGAEST: gi|152037719|gb|BP795989.2|BP795989
genomic: GATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTgtaagtactc ... gaaataacagACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGA
EST: TTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATT ACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGA
genomic: TTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTgtaagtactc ... gaaataacagACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCATCGAGGAAATCAAACATGCCTTAGAACAAGAGTGTCCTGAAACAGTTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTgtaagtactcatcacaattcactacacacaaaattagttgattattatcaataatttgacaaatgaaataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT