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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatatcattccttaccatacacactaatcatctatgtttgcaatttgcatgaccattaccaattcccctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58260.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124811556|gb|EH896422.1|EH896422
EST:     CTAACGTCAGGGTTATTGCTGAATGTGGCAACTG                         GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
genomic: CTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: gi|86074812|gb|DR370569.1|DR370569
EST:     CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG                         GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: gi|125256816|gb|EL270901.1|EL270901
EST:     CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG                         GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAAT
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAAT
EST: gi|124769569|gb|EH859699.1|EH859699
EST:     AACGTCAGGGTTATTGCTGAATGTGGCAACTG                         GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
genomic: AACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: gi|125159742|gb|EL187679.1|EL187679
EST:     CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG                         GAGAAAGTTCGTGTGGAAG
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAG