1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagtttctctcatttgatctgttctcccacatgctctttctcatatttccatttcactcag
species | Arabidopsis thaliana |
transcript | AT5G58260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG GTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGTEST: gi|125036611|gb|EL108880.1|EL108880
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGT
EST: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG GTCCTCTCAAAATCGGAGCTTCAAEST: gi|86018484|gb|DR314230.1|DR314230
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAA
EST: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG GTCCTCTCAAAATCGGAEST: gi|124737634|gb|EH829036.1|EH829036
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGA
EST: CCCCTAGTGCCAAGGGTCTTGTTGTATGGGCCCTCGAAGCAAAG GTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCEST: gi|125230326|gb|EL244411.1|EL244411
genomic: CCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTC
EST: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG GTCCTCTCAAAATCGGAGCTTCA
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagtttctctcatttgatctgttctcccacatgctctttctcatatttccatttcactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG