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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagtttctctcatttgatctgttctcccacatgctctttctcatatttccatttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG

Basic information

species Arabidopsis thaliana
transcript AT5G58260.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074812|gb|DR370569.1|DR370569
EST:     CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG                         GTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGT
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGT
EST: gi|125036611|gb|EL108880.1|EL108880
EST:     CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG                         GTCCTCTCAAAATCGGAGCTTCAA
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAA
EST: gi|86018484|gb|DR314230.1|DR314230
EST:     CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG                         GTCCTCTCAAAATCGGA
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGA
EST: gi|124737634|gb|EH829036.1|EH829036
EST:     CCCCTAGTGCCAAGGGTCTTGTTGTATGGGCCCTCGAAGCAAAG                         GTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTC
genomic: CCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTC
EST: gi|125230326|gb|EL244411.1|EL244411
EST:     CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAG                         GTCCTCTCAAAATCGGAGCTTCA
genomic: CTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTATGGGTCCTCGAAGCAAAGgtttgagttt ... tttcactcagGTCCTCTCAAAATCGGAGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcatttgatctgttctcccacatgctctttctcatatttccatttcactcagGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG
     atttgat  putative branch site (score: 5)
                           ctctttctcatatttc  putative PPT
                                  tcatattt  TA-rich tract