1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtatatcattccttaccatacacactaatcatctatgtttgcaatttgcatgaccattaccaattcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAACTTAATGGCACAAGTGGAGCTACCAGTGTATAGTTTTTCATG
species | Arabidopsis thaliana |
transcript | AT5G58260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAACGTCAGGGTTATTGCTGAATGTGGCAACTG GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAEST: gi|86074812|gb|DR370569.1|DR370569
genomic: CTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAEST: gi|125256816|gb|EL270901.1|EL270901
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATEST: gi|124769569|gb|EH859699.1|EH859699
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAAT
EST: AACGTCAGGGTTATTGCTGAATGTGGCAACTG GAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAEST: gi|125159742|gb|EL187679.1|EL187679
genomic: AACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACA
EST: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTG GAGAAAGTTCGTGTGGAAG
genomic: CTTCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGgtgagtatat ... tcccctgcagGAGAAAGTTCGTGTGGAAG
acacactaatcatctatgtttgcaatttgcatgaccattaccaattcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAACTTAATGGCACAAGTGGAGCTACCAGTGTATAGTTTTTCATG
cactaat putative branch site (score: 2)
ttcccctgc putative PPT
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatatcattccttaccatacacactaatcatctatgtttgcaatttgcatgaccattaccaattcccctgcagGAGAAAGTTCGTGTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAACTTAATGGCACAAGTGGAGCTACCAGTGTATAGTTTTTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT