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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcagtttactcttttccatttagattgttcttgagaactttttaattaccgtagttacatttgttttctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G57330.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G00780.1 (Glycine max), 5'ss of exon 8
-----------TCCTTCTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTCCAAAA---ACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaa-------cttcagtttactcttttccatttagat-tgttcttgagaactttttaattaccgtagttacatttgttttctgcag
           |||||||||||| |  |||||||||||||||||||| |||||  || |  ||  ||   | |   |          |  || |   |   |  | || ||||  |         ||| |  || |  || |  || || || | |  |     ||    ||| |  | || | || |  |||  ||  | 
CTTTCAACTGTTCCTTCTAGTTATTGTAGTGGACAGCTTGACCCCAAAAAAGTTATTCAAGGAAGCTGAAAGATCTCGTTGTGTTTTGTGTCCTGTACAGgtaataaaatgcacattgtatatttctttaaattgcctttatatatatatatatatattatcttacaaaataaatcacataatcac-tgagttaccttgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085426|gb|DR381185.1|DR381185
EST:     GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG                         TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
EST: gi|86081208|gb|DR376965.1|DR376965
EST:     GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG                         TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
EST: gi|86077080|gb|DR372837.1|DR372837
EST:     GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG                         TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT