1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacttcagtttactcttttccatttagattgttcttgagaactttttaattaccgtagttacatttgttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTATTTAAAGAAACTGAGATATTGAATAAAAATTGTTGCTTCTTAGTTCTCTT
species | Arabidopsis thaliana |
transcript | AT5G57330.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTATEST: gi|86081208|gb|DR376965.1|DR376965
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
EST: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTATEST: gi|86077080|gb|DR372837.1|DR372837
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
EST: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAG TACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
genomic: GACTCTTTCAAACTCCAAAAACAGCATCTTTCTCCCCTCTTTAATTGCAGgtaacttcag ... ttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTAT
tttagattgttcttgagaactttttaattaccgtagttacatttgttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTATTTAAAGAAACTGAGATATTGAATAAAAATTGTTGCTTCTTAGTTCTCTT
ttttaat putative branch site (score: 3)
tttgttttct putative PPT
agaactttttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcagtttactcttttccatttagattgttcttgagaactttttaattaccgtagttacatttgttttctgcagTACTATAAAGAAACGAGTGAAGGAGAGCTTAAAGATCATCGGATATACTATTTAAAGAAACTGAGATATTGAATAAAAATTGTTGCTTCTTAGTTCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA