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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttctattccaaactctcctcttttctgaaatatctctttttgtctagtatcatcatcactcataacaaaacacttgttacttggtgaaaaaatag

Basic information

species Arabidopsis thaliana
transcript AT5G57330.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G00780.1 (Glycine max), 5'ss of exon 6
AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttctattccaaactctcctcttttctgaaatatctctttttgtctagtatcatcatcactcataacaaaacacttgttacttggtgaaaaaatag
||| |||||||||||||| || || ||||||||||||||||||||| || | || ||||| ||||| ||||| || |||||  |||| |||||||| |||||||| ||  |   ||  |    | |   ||  ||||   | | |    | ||  || |   |      ||   ||| | |    | ||     |||   | 
AGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCGGAAgtaagattgtttaccctgatgtactttgctttagaaaacacacgtgggttttacaataaatgtgctgagtactgaaata-tgacaatttcccagaaatgga-

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G06880.1 (Glycine max), 5'ss of exon 6
AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttctattccaaactctcctcttttctgaaatatctctttttgtctagtatcatcatcactcataacaa-aacacttgttacttggtgaaaaaatag
||| |||||||||||||| || || ||||||||||||||||||||| || | || ||||| ||||| ||||| || |||||  |||| |||||||| |||||||| ||  | | ||    ||| || |  | |  || |      |  || |   |  |      ||   |  ||  | |  ||  | ||    || ||||  
AGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAAgtaagattgtt-taccttgttctactttgctttagaaaacacacgtgggtattacaataaatatgctgtgagtaatgaaatatgacaatttcc-aagaaatg-

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G17630.1 (Glycine max), 5'ss of exon 6
AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaag-ttttctattccaaactctcctcttttctgaaatat----ctctttttgtctagtatc--atcatcactcataacaaaacacttg-ttacttggtgaaaaaatag
||| |||||||| |||||||| ||  |||||||||| || |||||| || |||  || || ||||| ||||| || |||||  ||||||||||||| |||||||| ||   | ||||   || |  | ||||  |||  |     ||  | ||||  | | |   ||      | ||| ||  | | |   |||  ||            
AGTTCGGGTTGAGGGATTGGAGACCCTGGATTATCTCGATAACTTGCAGAACAAGGAGCGCTTTACTGAACAGGGGGATGCTTTAACTTTTGAATCAGAAgtaagattagtttttcccttctattttgttttaggaagcaagatgctgatattgttaaatgtagaatgtgggtttatatcactaaattgaattatctgaa----------

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G17630.3 (Glycine max), 5'ss of exon 6
AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaag-ttttctattccaaactctcctcttttctgaaatat----ctctttttgtctagtatc--atcatcactcataacaaaacacttg-ttacttggtgaaaaaatag
  | |||||||| |||||||| ||  |||||||||| || |||||| || |||  || || ||||| ||||| || |||||  ||||||||||||| |||||||| ||   | ||||   || |  | ||||  |||  |     ||  | ||||  | | |   ||      | ||| ||  | | |   |||  ||            
--TTCGGGTTGAGGGATTGGAGACCCTGGATTATCTCGATAACTTGCAGAACAAGGAGCGCTTTACTGAACAGGGGGATGCTTTAACTTTTGAATCAGAAgtaagattagtttttcccttctattttgttttaggaagcaagatgctgatattgttaaatgtagaatgtgggtttatatcactaaattgaattatctgaa----------

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G06380.1 (Glycine max), 5'ss of exon 6
AGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaag-ttttctattccaaactctcctcttttctgaaatatc-tctttttgtctagtatc--atcatcactcataacaaaacacttgttacttggtgaaaaaatag
||| ||||| || |||||||| ||  ||||||||||||| |||||| || |||  || || ||||| ||||| || |||||  |||| |||||||| |||||||| ||   | ||||   || |  | ||||  |||  |   |  |  | |  | | |   ||    | | ||  ||  | | |    |||   ||||| |    
AGTTCGGGTAGAGGGATTGGAGACCCTGGATTATCTTGATAACTTGCAGAACAAGGAGCGCTTTACTGAACAGGGGGATGCTTTAACGTTTGAATCAGAAgtaagattgatttttcccttcttttttgttttaggaagcaggatgctgatattaaatgtaggatgtggatttatttcactaaattga--actatctgaaata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125166546|gb|EL192292.1|EL192292
EST:     GATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCAC
genomic: GATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCAC
EST: gi|125267008|gb|EL281093.1|EL281093
EST:     CGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATCTAAGCACGCCAACAGAGATTGCTATTTTGGATCAC
genomic: CGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCAC
EST: gi|164034416|gb|ES197180.1|ES197180
EST:     ACAGGGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATCTAAG
genomic: ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATCTAAG
EST: gi|86081208|gb|DR376965.1|DR376965
EST:     ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCAC
genomic: ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCAC
EST: gi|125026164|gb|EL098433.1|EL098433
EST:     ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATC
genomic: ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATC
EST: gi|125283732|gb|EL297817.1|EL297817
EST:     CAGAGAACGTTTTACCGAACAAGGCGATGACGATAACTTTTGAATCCGAA                         GTTGACAAGATT
genomic: CAGAGAACGTTTTACCGAACAAGGCGATG-CGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATT
EST: gi|164230957|gb|ES014405.1|ES014405
EST:     ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAA                         GTTGACAAGATTTATCTAAGC
genomic: ACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAgtaagttttc ... gaaaaaatagGTTGACAAGATTTATCTAAGC